until now I got nearly everything to work but I'am stuck with Megan which of course has a GUI (what an irony). Over a long time I tried to load blast outputs, outputs from Diamond and today even an rma file generated with malt into Megan. This file was generated mapping reads from the illumina Sequencer against a Viral nr db with malt. But nothing is working. Whenever I load something the program is unable to assign at least a single read.
Why is this happening? I even downloaded the auxiliary mapping files for the taxon analysis as described. Has somebody an idea?
With kind regards,