retrieve 3prime UTR sequence for refseq genes
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6.2 years ago

I've got a list of Refseq gene IDs (NM_007393 etc) and I followed Refseq Mrna To Cds Sequence to get the CDS regions, but is it possible to get another list where it lists the 3 and 5' UTR regions if they are annotated or retrieve the 1kb region flanking regions (i can do it using http://www.informatics.jax.org/marker/MGI:87904, but would have to manually enter each gene in.)

 

 

Thanks!

UTR refseq genes sequence • 3.1k views
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Hi, 

sorry about the delay in replying, I was having some trouble accessing the website. Anyway, It's exactly what I was looking for. 

The only thing is, for some of the genes, it says "sequence unavaliable", since its not annotated, is there a way of using that website to get the 1kb downstream instead of utr annotations?

Thanks

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