Question: How to set K-mer length in velvet
0
gravatar for hassanein584
4.0 years ago by
hassanein5840 wrote:

I am a newer in velveth i download it and i want to make kimerlength =63 but i get a message that " no matches found: [MAXKMERLENGTH = 63]"

what can i do ?

my computer 16 GB ram

 

velvet assembly k-mer • 1.1k views
ADD COMMENTlink modified 4.0 years ago by Josh Herr5.6k • written 4.0 years ago by hassanein5840

You could read the velvet manual. When I compiled velvet, I had to include maxkmerlength (or something like that) flag. However, I seem to recall that there was some minor issue where in the manual they used " instead of ' or some accented version of these, which did not work as such at least on my command line..

ADD REPLYlink modified 4.0 years ago • written 4.0 years ago by 5heikki8.3k
3
gravatar for Prakki Rama
4.0 years ago by
Prakki Rama2.2k
Singapore
Prakki Rama2.2k wrote:

make 'MAXKMERLENGTH=63'

ADD COMMENTlink modified 4.0 years ago • written 4.0 years ago by Prakki Rama2.2k
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