How to set K-mer length in velvet
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9.1 years ago

I am a newer in velveth I download it and I want to make kimerlength =63 but I get a message that

no matches found: [MAXKMERLENGTH = 63]

What can I do?

My computer has 16 GB RAM

k-mer assembly velvet • 1.9k views
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You could read the velvet manual. When I compiled velvet, I had to include maxkmerlength (or something like that) flag. However, I seem to recall that there was some minor issue where in the manual they used " instead of ' or some accented version of these, which did not work as such at least on my command line..

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Entering edit mode
9.1 years ago
Prakki Rama ★ 2.7k
make 'MAXKMERLENGTH=63'
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