Question: bcftools extract data
0
gravatar for sacha
2.7 years ago by
sacha820
France
sacha820 wrote:

Without awk, only with bcftools, is there a way to view selected data from a vcf file ?

For exemple , show only Depth value , something like :

bcftools view a.vcf -select=DP 



extract bcftools • 834 views
ADD COMMENTlink modified 2.7 years ago • written 2.7 years ago by sacha820
1
gravatar for sacha
2.7 years ago by
sacha820
France
sacha820 wrote:

Sorry, I just found the answer :

bcftools query 
Extracts fields from VCF/BCF file and prints them in user-defined format

 

ADD COMMENTlink written 2.7 years ago by sacha820
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