Question: bcftools extract data
0
gravatar for sacha
2.9 years ago by
sacha1.0k
France
sacha1.0k wrote:

Without awk, only with bcftools, is there a way to view selected data from a vcf file ?

For exemple , show only Depth value , something like :

bcftools view a.vcf -select=DP 



extract bcftools • 907 views
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by sacha1.0k
1
gravatar for sacha
2.9 years ago by
sacha1.0k
France
sacha1.0k wrote:

Sorry, I just found the answer :

bcftools query 
Extracts fields from VCF/BCF file and prints them in user-defined format

 

ADD COMMENTlink written 2.9 years ago by sacha1.0k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 936 users visited in the last hour