Entering edit mode
9.1 years ago
Jeremy Leipzig
22k
CHOP Department of Biomedical and Health Informatics is looking for a "Bioinformatics Engineer II". This has strong sysadmin/devops components, so if you enjoy "maintaining the tracks" more than "loading the cars", this might be the right job for you.
- BS/MS in computational discipline required. BS/MS in systems engineering is preferred.
- 3-10 years experience in a production clinical or research bioinformatics data processing role required.
- Extensive knowledge with high performance and parallel computing environments and data processing workflows essential.
- Extensive experience with data storage frameworks essential.
- Extensive knowledge of CPU- and IO-intensive bioinformatics data analysis applications.
- Demonstrated track record of optimizing systems to meet changing performance and load requirements.
- Extensive knowledge of HPC systems, job management applications, including methods for profiling performance, benchmarking, and optimizing multiple job types and scenarios in bioinformatics data processing.
- Ability to independently plan and execute pipelines and workflows of high complexity required.
- Ability to independently engineer systems relative to larger enterprise framework required.
- Strong UNIX/LINUX expertise required.
- Expertise with build tools such as Make required
- Experience with configuration management tools such as Puppet is required.
- Experience with system monitoring tools such as Nagios is required.
- Experience in version control management in tools such as Git required.
- Expertise in support mechanisms for applications written in common bioinformatics languages such as R, Python, Perl or similar required
- Expertise in support mechanisms for common bioinformatics applications, data sources, and data formats required.
- Knowledge of common microarray, NGS, mass spectrometry, or other high-throughput data formats is required.
- Expertise with resources of genomic data sets and analysis tools, such as UCSC Genome Browser, Bioconductor, ENCODE, and NCBI databases is required.
- Demonstrated ability to develop and implement best practices for bioinformatics systems integration, testing, and automated deployment is required.
- Expert knowledge with cloud computing concepts and applications is required.
- Ability to lead discussions with various information systems and technology owners to achieve desired bioinformatics outcomes is required.
https://www.chop.edu.apply2jobs.com/ProfExt/index.cfm?fuseaction=mExternal.showJob&RID=35768
