Hi,
I would like to download all .CEL files from samples with specific characteristics.
For example, I need to obtain all .CEL files with "normal skin" (or any other characteristic "fibroblasts", "nephroblastoma", "breast cancer tumor", etc. ) from all GEO Datasets/Series on GPL570 platform.
Now I search datasets. read "Sample information" on GEO and download it manually.
I found database http://metadb.bmes.nthu.edu.tw/m2db/Index.html. But it is not enough.
How can I do this automatically? Does such soft or script exist? Or any idea how can I do this script in R (books, article, etc)?
How to download multiple GSE related CEL files EX: GSE 50697, GSE 43837 and more such id at once using GEOQuery. Script will be appreciated. I would be very thankful if anyone can help me in this matter. Its little urgent, so kindly provide me your reply soon.
Thanks in advance!!