I have Human Exon 1.0 ST Array data, and use APT, R and easyExon to calculate splicing. I read some paper, which said that visual check is important, I just want to know how can I comfirm one splicing is not true?
This question is a bit vague. It is not really clear what you want to do. You should provide citation details for the paper you mention.
There are many tools to assist in the analysis of Affy Exon Arrays listed here:
Tools for processing Affymetrix data
You may also find the Exon Array Analyzer helpful.
This post may also contain some useful info.
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