Question: GEM mappability > wig/bedgraph : how to interprete
gravatar for mehran.karimzade
3.4 years ago by
mehran.karimzade120 wrote:


I have used gem mappability software to convert their encoded fasta format to wiggle and bedgraph.

However I understand that while their values in the encoded FASTA format ranges to thousands, in bedgraph, as expected, these values are ranging between 0-1.


I was not able to find any documentation on how to interprete these values.

For example, if I intend to call some regions of the genome as unmappable, what threshold I should use, etc.




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