Question: scoring matrix of blast
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gravatar for sharma_tina189059
4.7 years ago by
United States
sharma_tina18905950 wrote:

hi,

can anyone tell me about calculating raw value in blast. I know the formula that it is the sum of all match, mismatch and gaps and used to calculate the bit score. but based on scoring matrix how can we calculate two amino acid sequence. I need to resemble my results with the results of blast.

blast • 1.7k views
ADD COMMENTlink modified 4.7 years ago by wpwupingwp110 • written 4.7 years ago by sharma_tina18905950
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gravatar for wpwupingwp
4.7 years ago by
wpwupingwp110
China
wpwupingwp110 wrote:

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins

In Algorithm parameters, choose your matrix

ADD COMMENTlink written 4.7 years ago by wpwupingwp110
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