I am running a local blast program in apche2 server...but it showing me error that.
--------------------- WARNING ---------------------
MSG: cannot find path to blastall
---------------------------------------------------
My code is..
#!/usr/bin/perl
print "Content-type: text/html\n\n";
use Bio::Perl;
use Bio::Tools::Run::StandAloneBlast;
@params = ('database' => 'btaudb','outfile' => 'bla.out',
'_READMETHOD' => 'Blast', 'prog'=> 'blastn');
$factory = Bio::Tools::Run::StandAloneBlast->new(@params);
$str = Bio::SeqIO->new(-file=>'test_query.fa' , '-format' => 'Fasta' );
$input = $str->next_seq();
$factory->blastall($input);
when i am running the same code in terminal its working fine...and showing mw correct result....pl help me..how to run local balst program in apche2 server.....
Is your perl script in the same folder as blastall?
btw, this is slightly off-topic, even though it might not be obvious at first glance.