Question: what does the branch length computed with APE neighbor joining tree represent ?
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gravatar for Michel Edwar
3.7 years ago by
Michel Edwar50
Sweden
Michel Edwar50 wrote:

Hi,

I have build a tree using the dist.alignment() function in seqinr and the  nj in APE for amino acids

what does the branch length represent ?

is it a genetic distance or number of substitutions of amino acids or something else ?

Regards

 

ADD COMMENTlink written 3.7 years ago by Michel Edwar50
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