Question: calcroicovg problem genome
0
gravatar for qwertyuiop201320142015
2.6 years ago by

when i get in the cal-roi-covg and use the command--make. It has a problem in the list;
gcc -g -Wall -O2 -I/home/xuhb/xuhb/calc-roi-covg/samtools calcRoiCovg.c -o calcRoiCovg -L/home/xuhb/xuhb/calc-roi-covg/samtools -lbam -lm -lz -pthread
In file included from calcRoiCovg.c:12:
/home/xuhb/xuhb/calc-roi-covg/samtools/sam.h:28:24: error: htslib/sam.h: 没有那个文件或目录
In file included from /home/xuhb/xuhb/calc-roi-covg/samtools/sam.h:29,
                 from calcRoiCovg.c:12:
/home/xuhb/xuhb/calc-roi-covg/samtools/bam.h:48:25: error: htslib/bgzf.h: 没有那个文件或目录

any help will be appreciate!thank u!

music calroicovg reference • 795 views
ADD COMMENTlink modified 2.6 years ago by Cyriac Kandoth4.7k • written 2.6 years ago by qwertyuiop2013201420150
1
gravatar for Cyriac Kandoth
2.6 years ago by
Cyriac Kandoth4.7k
Memorial Sloan Kettering, New York, USA
Cyriac Kandoth4.7k wrote:

Please refer to the build instructions at Installation of the MuSiC suite on unsupported Linux distributions. From your error message, you are likely missing the zlib1g-dev (aka zlib-devel) library.

ADD COMMENTlink written 2.6 years ago by Cyriac Kandoth4.7k

Thanks for you answer!But I have installed the zlib1g-dev and it is the lastest version.I install the MuSiC in the Ubuntu 10.04.I really don't konw what happened!

ADD REPLYlink written 2.6 years ago by qwertyuiop2013201420150

hello  thank you for help me ! I have a question. where are you find the calroicovg.c source code of cal-covg. i eager to know it. Thank you very much.

ADD REPLYlink written 2.5 years ago by qwertyuiop2013201420150

https://github.com/ding-lab/calc-roi-covg/blob/master/calcRoiCovg.c

ADD REPLYlink written 2.5 years ago by Cyriac Kandoth4.7k

yeah,it's very useful for me.Can I get the source code of cal-bmr? Where can I find it? thank you.  and where can I get the source code of the genome MuSic ? Thank you again.

ADD REPLYlink written 2.5 years ago by qwertyuiop2013201420150

hello  thank you for help me ! I have a question. where are you find the calroicovg.c source code of cal-covg. i eager to know it. Thank you very much.

ADD REPLYlink written 2.5 years ago by qwertyuiop2013201420150
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