Question: database that links EntrezGeneIDs and EnsemblIDs
1
gravatar for m_02
3.8 years ago by
m_0220
United States
m_0220 wrote:

i need both id types i.e(ensembl proteinIDs and KEGG) translated to EntrezGeneIDs.is there any database that links EntrezGeneIDs and EnsemblIDs?

database • 881 views
ADD COMMENTlink modified 3.8 years ago by David W4.7k • written 3.8 years ago by m_0220
1
gravatar for Sean Davis
3.8 years ago by
Sean Davis25k
National Institutes of Health, Bethesda, MD
Sean Davis25k wrote:

http://www.ensembl.org/biomart/martview

ADD COMMENTlink written 3.8 years ago by Sean Davis25k
0
gravatar for cdsouthan
3.8 years ago by
cdsouthan1.8k
cdsouthan1.8k wrote:

UniProt query  = 18,547
 

http://www.uniprot.org/uniprot/?query=database%3A%28type%3Aensembl%29+AND+database%3A%28type%3Ageneid%29+AND+reviewed%3Ayes+AND+organism%3A%22Homo+sapiens+%28Human%29+[9606]%22+AND+database%3A%28type%3Akegg%29&sort=score

database:(type:ensembl) database:(type:geneid) database:(type:kegg) AND reviewed:yes AND organism:"Homo sapiens (Human) [9606]"

 

 

ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by cdsouthan1.8k
0
gravatar for David W
3.8 years ago by
David W4.7k
New Zealand
David W4.7k wrote:

Biomart (linked to by Sean above) is pretty much your first port of call for all id-mapping problems. 

In this case, ensembl also has a REST endpoint for gathering cross refs:

http://rest.ensembl.org/xrefs/id/ENST00000288602?content-type=application/json;

 

ADD COMMENTlink written 3.8 years ago by David W4.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 861 users visited in the last hour