Hi, I have two ChIP-seq bed files of same transcription factor. I want to compare one specific binding motif between these two ChIP-seq binding peaks, i.e. whether the motif is more enriched in the binding sites of one ChIP-seq vs. the other (under different culture condition)?
The plots I want to make is by X axis: "Distance from centre of ChIP region (bp)" and the Y axis: " No. motif / no. binding sites"
Thank you for your answers!