access to dataset in insilicodb
2
0
Entering edit mode
9.1 years ago

When I write this command in R

eset1 = getDataset("GSE3188", "GPL570", norm="FRMA", features = "gene", curation = 9272)

after loading library(insilicobd)

R says:

INSILICODB: You are not allowed to access this dataset.

I don't know what is problem and how can I solve it?

R • 2.0k views
ADD COMMENT
0
Entering edit mode
9.1 years ago
PoGibas 5.1k

From the documentation: 1.2 Check the accessibility of data

You need to login to access datasets and datasetinfo

ADD COMMENT
0
Entering edit mode

Thank you Pgibas

ADD REPLY
0
Entering edit mode
8.1 years ago

I have the same problem. and I have logged in using username and md5 hash password.

Commands used:-

biocLite("inSilicoDb")
library(inSilicoDb)
install.packages('digest', repos='http://cran.us.r-project.org')
library(digest)

InSilicoLogin("************@gmail.com", digest::digest('PASSWORD', algo='md5', serialize=FALSE));
eset42743 = getDataset("GSE42743", "GPL570", "FRMA", genes=TRUE);

It shows warning:

INSILICODB: The bioinformatics pipeline is now running. An email will be sent when computation is finished.
  INSILICODB: Dataset GSE42743, GPL570, CURESET, PROBE, ORIGINAL, 20339, RNA, Oral Cavity Cancer Compared to Adjacent "Normal" Tissue [Validation Set], queued, 110, GSE42743GPL570_RNA_ORIGINALPROBE_20339.RData
ADD COMMENT

Login before adding your answer.

Traffic: 1485 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6