Hello, I am running the command like:
samtools mpileup -uf hg18.fa my.bam | bcftools view -cg - | vcfutils.pl vcf2fq > cns.fq
However I got many many warnings on the screen which are like
Argument "chr1^I22217285^I.^IT^I.^I28.2^I.^IDP=1;;CI95=1.5,0;FQ=-3..." isn't numeric in numeric lt (<) at /mypath/samtools/bcftools/vcfutils.pl line 503, <> line 21409998. Argument "chr1^I22250317^I.^IT^I.^I28.2^I.^IDP=9;;CI95=1.5,0;FQ=-3..." isn't numeric in numeric lt (<) at /Mypath/samtools/bcftools/vcfutils.pl line 503, <> line 21443057.
What is wrong and how to avoid it? My reference fa file likes