Question: pairwise alignning of multiple protein sequences
gravatar for vahideh
5.5 years ago by
vahideh20 wrote:


I have  4 protein sequences in FASTA format that its 2 sequences  is for Human and others are for Mouse!

I want  to align these sequences in R where 2 human sequences aligning with 2 mouse sequences; for displaying homologous between human and mouse protein sequences.

please help me!

ADD COMMENTlink modified 5.5 years ago by Antonio R. Franco4.5k • written 5.5 years ago by vahideh20
gravatar for Antonio R. Franco
5.5 years ago by
Spain. Universidad de Córdoba
Antonio R. Franco4.5k wrote:

It has to be with R?

If you go to NCBI BlastP, you have a choice to mark that will allow to compare two sequences, and this will be easier to accomplish


ADD COMMENTlink written 5.5 years ago by Antonio R. Franco4.5k

Thank you, Antonio

but actually it is a practice for me! I will do it with one group (include 60 protein sequences) for human and one group (50 proteins) for mouse!

ADD REPLYlink written 5.5 years ago by vahideh20
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