pairwise alignning of multiple protein sequences

Question

[vahideh]

Hi!

I have 4 protein sequences in FASTA format that its 2 sequences is for Human and others are for Mouse!

I want to align these sequences in R where 2 human sequences aligning with 2 mouse sequences; for displaying homologous between human and mouse protein sequences.

Please help me!

Answer 1

[Antonio R. Franco]

It has to be with R?

If you go to NCBI BlastP, you have a choice to mark that will allow to compare two sequences, and this will be easier to accomplish

[vahideh]

Thank you, Antonio but actually it is a practice for me! I will do it with one group (include 60 protein sequences) for human and one group (50 proteins) for mouse!