Question: Batch Glimmer3 annotation for multiple fastas
gravatar for oliver.bayfield
5.5 years ago by
United States
oliver.bayfield160 wrote:

I have a fasta nt file containing about 2000 bacterial/archeal entries, and I'd like to use something like glimmer to do the gene calling inside each fasta sequence, each of about 3000nt (I predict 2 or 3 genes each entry).
Is there a server that would allow a batch upload and then treat each entry separately? Output could be in genbank format or protein fasta.
I know RAST has something like this but with the way I've submitted it I think it's going to try to assemble all my ~2000 "contigs" - correct me if I'm wrong - which isn't desirable.

annotation fasta • 1.3k views
ADD COMMENTlink modified 3.9 years ago by Biostar ♦♦ 20 • written 5.5 years ago by oliver.bayfield160

Maybe MG-RAST?

ADD REPLYlink written 5.5 years ago by h.mon31k
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