I'm analyzing the agilent microarray data using limma package. I have performed normalization using
y <- normalizeBetweenArrays(y,method="quantile")
now I need to get the normalized gene expression values. I have used the command
write.table(y, file="Tt.txt", sep="\t", quote=FALSE)
to get the expression values of genes. In the output text file I can see the gene names, expression values along with sequence names and probe names.
Is there any package to remove the sequence names and probe names?
Thank you in advance.