how to convert .pdb files to .dpf for docking via Autodock?

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8.9 years ago

farbodshahabi • 0

Hi dears

I want to do a docking job by Autodock program (on linux) and it seems that autodock does not support .pdb extensions for proteins. And all the sites like RSCB just give me the .pdb file and not the .dpf file which is usable in Autodock.

Have you encountered this problem yet? what should I do?

Thanks in advance

pdb proteins docking dpf • 3.3k views

ADD COMMENT • link updated 15 months ago by Ram 43k • written 8.9 years ago by farbodshahabi • 0

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Did you check this tutorial? Everything is clearly explained.

ADD REPLY • link updated 15 months ago by Ram 43k • written 8.9 years ago by venu 7.1k

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Thanks but the network speed is sow low in Iran (plus youtube is filtered) that practically I can't watch it. Could you please address me to a text-based tutorial about dpf files?

ADD REPLY • link 8.9 years ago by farbodshahabi • 0

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You can go to the link below and it will help you in making the .pdb file in desired format

http://www.dockingserver.com/web/gettingstarted/#start

ADD REPLY • link updated 15 months ago by Ram 43k • written 7.7 years ago by mks002 ▴ 220

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