Graph viewer for Reactome Pathways
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6.0 years ago
Deepak Tanwar ★ 4.1k

To view the pathways, we could use the pathview in R. 

OR

We could use the KEGG Mapper

Is there a Bioconductor package or mapper for Reactome pathways also?

Reactome R Graph viewer • 1.8k views
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Try http://bioinformatics.oxfordjournals.org/content/26/9/1225.short

Software requires XML files for viewing KEGG Pathways, might also work for Reactome pathways.

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Thank you munmunpoddar

I will try.

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3 months ago
darklings ▴ 260

Try the exporters of Reactome pathway diagrams and SBGN/SBML files in Reactome's Content Service R package: https://bioconductor.org/packages/devel/bioc/html/ReactomeContentService4R.html. (vignette)

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