I am working with
systemPipeR software. In section 5.1 there is a line of code that seems I cannot make it run.
counteByg <- bplapply(bfl, function(x) summarizeOverlaps(eByg, x, mode="Union", + ignore.strand=TRUE, + inter.feature=FALSE, + singleEnd=TRUE))
When I check
counteByg for each BAM file it says that it cannot find
$tag12_PA01BR3.bam  "Error in FUN(...): could not find function \"summarizeOverlaps\"\n" attr(,"class")
What am I doing wrong?
GenomicAlignments loaded definitely!
Thanks in advance!