Question: how to group/cluster gene by pathways
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gravatar for marina.kimyr
4.7 years ago by
marina.kimyr10
United States
marina.kimyr10 wrote:

I have 200 differentially expressed genes from an RNAseq analysis. I saw some heatmap in the literature where people clustered their genes by functionality or pathway. Without doing this one by one, how can I group genes by pathways or by functionality? Let's say that all NFKB genes should cluster under the category inflammatory response or NFKB pathways etc.. 

 

I'm looking for a platform where I can simply input my list of genes, I already have a heatmap of our genes, I can use R to cluster if needed.

ADD COMMENTlink written 4.7 years ago by marina.kimyr10

You can try inputting your transcripts to KEGG KAAS. It assigns KO ID to each of your transcript and lists out the KO ID's under each pathway.

ADD REPLYlink written 4.7 years ago by Prakki Rama2.4k
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