How can I do blast of cDNA library in single command, and stored the top 10 result in single file
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7.5 years ago
tcf.hcdg ▴ 70

I have data from cDNA library. I wanted to do blast the entire library against protein database. Is there any possibilitiy to do blast the entire librarz in single run and stored the result information in separate file??

 

blast sequencing • 2.3k views
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7.5 years ago
Ram 37k

If you use stand-alone blast, it is a simple matter of storing all queries in a single FASTA file to use as the query input and either using the remote option or downloading the relevant database to run BLAST.

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7.5 years ago

blastx -db proteindb -out out.blast < input.fa

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I like how you cut to the chase

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