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8.9 years ago
kanwarjag
★
1.2k
I downloaded GSE45002 which is a public illumina gene expression array. However the data only has non-normalized data. How best I can analyze or at least normalized this data. I am sure there should be some method otherwise it is of no use of submitting data to GEO.
Thanks
The data is in txt file:
In affy we have cel files in GEO but we don't have anything like this in case of Illumina expression data. So not sure how to process it. I think limma may need more information in addition to raw intensity and there are no bead column and other information is there
See if this helps.