Entering edit mode
7.7 years ago
tcf.hcdg ▴ 70
I hava a sequence file containing 10,22,058 entries in fasta format. I wanted to load this file in the R using "seqinr" package.
I have installed the seqinr and ade4 packages.
When I run the command it gives the error and only around 10,000 sequences out of 10,22,058 are showed in the console window.
The code I tried to load the file id
getwd() library(seqinr) library(ade4) read.fasta(file="Z:/R/07072015/CSANX.fasta", seqtype ="AA", as.string = TRUE, set.attributes = FALSE, legacy.mode = TRUE, strip.desc = FALSE)
after executing it gives the error
[ reached getOption("max.print") -- omitted 1012058 entries ]
Could you please guide what could be the possible reason for this.
Thanks in advance
Thanks for correction.
This command works in this warning.
If you just wanted to view a fasta file it'd be simpler to just use