Question: How to map a set of proteins to a reference protein ?
0
gravatar for anuj2054
3.9 years ago by
anuj20540
United States
anuj20540 wrote:

I have a set of 14 proteins that are from different organism. I want to map them to the human homolog of that protein to see where they align with the human sequence. PLease note that I do not want to do a multiple alignment of all the 15 proteins ( 14 organism protein + 1 human protein).

Thanks,

ANuj

mapping alignment • 1.3k views
ADD COMMENTlink modified 3.9 years ago by benaneely70 • written 3.9 years ago by anuj20540
1

Do you know what the human homolog is, or is that what you are searching for?  If you are not wanting to do a multiple sequence alignment to see sequence similarity then what are you trying to do?  Align the structures?

ADD REPLYlink written 3.9 years ago by alolex890
1
gravatar for Pierre Lindenbaum
3.9 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum120k wrote:

blastp http://blast.ncbi.nlm.nih.gov/blast/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome

ADD COMMENTlink written 3.9 years ago by Pierre Lindenbaum120k
0
gravatar for benaneely
3.9 years ago by
benaneely70
United States
benaneely70 wrote:

I really like UniProt's blast implementation. You can limit your taxon (in the results) to ole 9606 H. sapiens as well.

ADD COMMENTlink written 3.9 years ago by benaneely70
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