How to map a set of proteins to a reference protein ?
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7.6 years ago
anuj2054 ▴ 20

I have a set of 14 proteins that are from different organism. I want to map them to the human homolog of that protein to see where they align with the human sequence. PLease note that I do not want to do a multiple alignment of all the 15 proteins ( 14 organism protein + 1 human protein).

Thanks,

ANuj

alignment mapping • 2.2k views
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Do you know what the human homolog is, or is that what you are searching for? If you are not wanting to do a multiple sequence alignment to see sequence similarity then what are you trying to do? Align the structures?

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7.6 years ago
benaneely ▴ 70

I really like UniProt's blast implementation. You can limit your taxon (in the results) to ole 9606 H. sapiens as well.

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