Question: Multiple regression for indel data in plink
0
gravatar for doommonk
4.5 years ago by
doommonk10
United Kingdom
doommonk10 wrote:

Hi,

I am trying to conduct a multiple regression on indel data. In my vcf file I have some variants that are biallelic and some which are multiallelic. I have already tested the biallelic data so only need to run the multiallelic.

I was given this line of code as a guide "plink --bfile mydata --linear --covar mycov.txt"

I'm not sure how to lay out my covar file though or what to include in it.

Any help would be great thanks

 

ADD COMMENTlink modified 4.5 years ago • written 4.5 years ago by doommonk10

I know the covar file is meant to be formated like:

FID    IID    COV 

But should the cov be the different types of alleles or genotypes

ADD REPLYlink written 4.5 years ago by doommonk10
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