Question

Seq Qc/Trimming Code Preferences?

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12.9 years ago

Holly ▴ 30

Does anyone have any preferences that they might like to share regarding QC/Trimming tools for RNAseq? I have been testing FASTX, FASTQC and Prinseq. I like Prinseq the best so far, and also know there is alot available on bioconductor. I need sometihing that will feed into Bowtie/Tophat. Opinions? thanks, holly

qc trimming next-gen rna • 2.1k views

ADD COMMENT • link updated 12.8 years ago by Chris Penkett ▴ 490 • written 12.9 years ago by Holly ▴ 30

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http://biostar.stackexchange.com/questions/1924/trimming-algorithm

ADD REPLY • link updated 4.9 years ago by Ram 44k • written 12.9 years ago by Jeremy Leipzig 22k

score 1 · Answer 1 · 2011-12-08

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12.9 years ago

Chris Penkett ▴ 490

RNA-SeQC is a new Broad tool to do visual QC for RNA-seq data.

ADD COMMENT • link 12.9 years ago by Chris Penkett ▴ 490