Seq Qc/Trimming Code Preferences?
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12.5 years ago
Holly ▴ 30

Does anyone have any preferences that they might like to share regarding QC/Trimming tools for RNAseq? I have been testing FASTX, FASTQC and Prinseq. I like Prinseq the best so far, and also know there is alot available on bioconductor. I need sometihing that will feed into Bowtie/Tophat. Opinions? thanks, holly

qc trimming next-gen rna • 2.1k views
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12.5 years ago
Chris Penkett ▴ 490

RNA-SeQC is a new Broad tool to do visual QC for RNA-seq data.

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