Hi, I'm wondering if anybody has any experience of trying to process fasta sequence reads using Galaxy? Galaxy doesn't seem to accept fasta reads by default.
I guess you'd have to convert to fastq locally first (there doesn't seem to be a tool for that on Galaxy), which would probably involve leaving the quality score column blank, which might cause problems downstream I guess.
Just wondering if anyone has tried this. If Galaxy can't handle fasta it looks like I can use Bowtie to align them locally.