Question: RealignerTargetCreator GATK alignment
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gravatar for mailfromiob
3.8 years ago by
India
mailfromiob0 wrote:

Please guide me,  what difference in two vcf files 1000G_phase1.indels.chrb37.vcf and Mills_and_1000G_gold_standard.indels.chrb37.sites.vcf 

next-gen • 898 views
ADD COMMENTlink modified 3.7 years ago by rbagnall1.4k • written 3.8 years ago by mailfromiob0
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gravatar for rbagnall
3.7 years ago by
rbagnall1.4k
Australia
rbagnall1.4k wrote:

Mills_and_1000G_gold_standard.indels.b37.sites.vcf is an indels dataset that was created at the Broad by strictly curating the Mills et al Genome Research, 2011 (PMID: 21460062) dataset.

1000G_phase1.indels.b37.vcf are very high confidence indels currently from the 1000 Genomes Phase I indel calls.

ADD COMMENTlink written 3.7 years ago by rbagnall1.4k
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