Question: How to Calculate the genetic distance between SNPs with the positions known
1
gravatar for ice4prince
4.4 years ago by
ice4prince10
United States
ice4prince10 wrote:

<embed adlesse_been_here="true" height="0" id="xunlei_com_thunder_helper_plugin_d462f475-c18e-46be-bd10-327458d045bd" style="line-height: 1.6;" type="application/thunder_download_plugin" width="0"/>Dear All,

      I'm new in bio information. I have the 60 SNPs with their positions(found from NCBI) in excel. Also I have one sample from 3 populations and their haplotypes. 

    Can I calculate the genetic distance between each two SNPs? What format of files include the information of genetic distance.

 

 

  Thank you so much!

 

 

 

snp • 3.1k views
ADD COMMENTlink modified 3.3 years ago by Biostar ♦♦ 20 • written 4.4 years ago by ice4prince10
0
gravatar for Emily_Ensembl
4.4 years ago by
Emily_Ensembl20k
EMBL-EBI
Emily_Ensembl20k wrote:

Have you tried subtraction?

ADD COMMENTlink written 4.4 years ago by Emily_Ensembl20k

<embed adlesse_been_here="true" height="0" id="xunlei_com_thunder_helper_plugin_d462f475-c18e-46be-bd10-327458d045bd" type="application/thunder_download_plugin" width="0"/>subtraction can just get a result of the physical distance. Rather than a genetic one. 

ADD REPLYlink written 4.3 years ago by ice4prince10
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