I am facing problem in creating bcf and vcf files. When I try to make bcf file using samtools-1.2, it aborts by giving error
"Set max per-file depth to 8000"
However, when I do the same thing using older version of samtool-0.1.19, the bcf file is created.
Now, when calling variants using bcftools-1.2, it gives error "Failed to read bcf file."
However, When I used older version of bcftools-0.1.19, it makes vcf.gz file which is empty.
Kindly suggest is it samtools/bcftools version compatibility issue, or something else.