how XFMA file can be converted to nexus or phylip for further phylogenetic analysis
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6.8 years ago
jeccy.J ▴ 60

Hello all can anyone suggest me how to convert

XFMA file to converted to nexus or phylip for further phylogenetic analysis?

I have tried like this  in bioperl but somehow its not converting properly.

use Bio::AlignIO;
 
$in  = Bio::AlignIO->new(-file => "test.xmfa" ,
                         -format => 'xmfa');
$out = Bio::AlignIO->new(-file => ">test",
                         -format => 'phylip');
 
while ( my $aln = $in->next_aln ) {
  $out->write_aln($aln);
}

 

Thanks advance. 

 

 

XMFA phylip • 2.0k views
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