I try to use the seqret tool from Emboss but I'm experiencing some difficulties.
I would like to create am EMBL formatted file from a gff3 file and a fasta file.
I'm using the following command:
seqret -sequence genome.fasta -feature -fformat gff -fopenfile annotation.gff -osformat embl
My fasta file contains several sequences.
The problem is, the tool writes the gff3 features but as many time as there is a sequence in the fasta file (before each sequence).
Does someone has already experienced that and knows a way to avoid the problem ?
Or any idea about another tool to do that conversion ?