finding orthologs in four genomes

Question

[Mehmet]

Dear All

I have four genomes of four species which belong to the same genus, and I want to find orthologs among these species. I heard that orthoMCL can be used to find them. what is the workflow for this?

Thanks

Answer 1

[h.mon]

OrthoMCL documentation is quite detailed, you should read it carefully. There is also a good tutorial here. However, your first step is to perform annotation and find genes on your genomes.

[Mehmet]

Thank you very much, I will try