Entering edit mode
8.7 years ago
Kumar
▴
170
Hi,
I have a list of gene's start and stop position, how can I extract sequence from local genome DNA sequence. Example is following:
Query: list of genes position start and stop
1234:1763
2898:10364
29453:30134
31271:31426
40895:41359
45278:45370
52312:53449
>Chromosome 4
CGGTTGAGGAATGGTCGACGAAAATCTATCGGGTTCGAGGATTCGTCGACCAGGTGTTGG
AATCGTCGACCGAGTCTGAGAATTCGTAGACCAGGACGGCGGAATCCTCGACAATGACGA
GGTATGGTCGAGGAAAATCTATCGGGTTCGAGGATTCGTCTACCAGGTGATGGAATCCTC
GACCAGGACAAAGAATTCGTCGACCAGGGGTGGAATTGTTGTTATTCCGATCATGAGAGC
GGATATCAGTACAGATCCGACGCTGGTGAAAAAGATCACGGCGATCGTGGATAGTATCAA
GCCACCGAGAGTCTCGTATTCGGAGAAAGATCGGCCGATGAGGATAAGAGGTCGATCGGA
TGGACGGAAGAGGTAGAGGAAGAGCCATGAAGCGGCGAGGCATAGGAGGAGGATGAGCGA
GAATGGGTGGGCGGGAAGAGAGAAACTGATGATCAGAGCGATGATGCAGACGTAATTCAC
CCTGAAATAAGAGGAGTTCTTCCAGAATCGCGTCATGGCCTCGAAGACAGAGTCAAGCTT
GGTGAAAAGCAGATCGTTCGAGGAGCTCTGACCACGGCCGGCTACGAGATAGACCACCAC
GAACCGTCTTGGTCACACTGTTGACAAATGCATGGACGGTTGGAGGTTGTGATTCCACCA
CATCAGTTACAATCGGAGGCTGATCCGGACTTGGCTGTTGCGGTGGTGGAAATCGGAAGC
ACAGGGGGATTTGTGGACACCATTCGATTTTGTTCTTTAGGGATTTCAAGATTGGAAAAT
TTTAGGAGACGATTGATTTGGAAGTCGGTGAAGTTTCGGTAGTGTTATGTATTTATTTTT
TTTGTCATAAGCGGTAGCGTTATGTATTTGTAAGATCACATTAAGCGTCTTTCAACTTTG
ATTATACGCATTGCTTCATCTGATATCTAATCCATATTTTGATCAAAGTGACATTTGATA
AAATAAAATAAAACTAACCTATTAATATTATAACTGAGGTTATTTTTTTAGAAAAAAGAT
AGCTAGCTACACGAATTATACGAGAATACATGGTCACATGCCAAGTATATTATTGTATCC
TTAACTACACGAAATTTATGTATTGCATGGCCACATATATGAACTATAC