Off topic:fetch sequence from local genome DNA sequence using list of gene's start and stop position
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Entering edit mode
8.7 years ago
Kumar ▴ 170

Hi,

I have a list of gene's start and stop position, how can I extract sequence from local genome DNA sequence. Example is following:

Query: list of genes position start and stop

1234:1763
2898:10364
29453:30134
31271:31426
40895:41359
45278:45370
52312:53449
>Chromosome 4
CGGTTGAGGAATGGTCGACGAAAATCTATCGGGTTCGAGGATTCGTCGACCAGGTGTTGG
AATCGTCGACCGAGTCTGAGAATTCGTAGACCAGGACGGCGGAATCCTCGACAATGACGA
GGTATGGTCGAGGAAAATCTATCGGGTTCGAGGATTCGTCTACCAGGTGATGGAATCCTC
GACCAGGACAAAGAATTCGTCGACCAGGGGTGGAATTGTTGTTATTCCGATCATGAGAGC
GGATATCAGTACAGATCCGACGCTGGTGAAAAAGATCACGGCGATCGTGGATAGTATCAA
GCCACCGAGAGTCTCGTATTCGGAGAAAGATCGGCCGATGAGGATAAGAGGTCGATCGGA
TGGACGGAAGAGGTAGAGGAAGAGCCATGAAGCGGCGAGGCATAGGAGGAGGATGAGCGA
GAATGGGTGGGCGGGAAGAGAGAAACTGATGATCAGAGCGATGATGCAGACGTAATTCAC
CCTGAAATAAGAGGAGTTCTTCCAGAATCGCGTCATGGCCTCGAAGACAGAGTCAAGCTT
GGTGAAAAGCAGATCGTTCGAGGAGCTCTGACCACGGCCGGCTACGAGATAGACCACCAC
GAACCGTCTTGGTCACACTGTTGACAAATGCATGGACGGTTGGAGGTTGTGATTCCACCA
CATCAGTTACAATCGGAGGCTGATCCGGACTTGGCTGTTGCGGTGGTGGAAATCGGAAGC
ACAGGGGGATTTGTGGACACCATTCGATTTTGTTCTTTAGGGATTTCAAGATTGGAAAAT
TTTAGGAGACGATTGATTTGGAAGTCGGTGAAGTTTCGGTAGTGTTATGTATTTATTTTT
TTTGTCATAAGCGGTAGCGTTATGTATTTGTAAGATCACATTAAGCGTCTTTCAACTTTG
ATTATACGCATTGCTTCATCTGATATCTAATCCATATTTTGATCAAAGTGACATTTGATA
AAATAAAATAAAACTAACCTATTAATATTATAACTGAGGTTATTTTTTTAGAAAAAAGAT
AGCTAGCTACACGAATTATACGAGAATACATGGTCACATGCCAAGTATATTATTGTATCC
TTAACTACACGAAATTTATGTATTGCATGGCCACATATATGAACTATAC
gene genome • 1.3k views
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