Visualizing multiple average profiles
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5.8 years ago
Saad Khan ▴ 400

What would be a good way to visualize the average profiles across multiple tissues and samples. That is to say something like this visualized over multiple tissues :-

[IMG]http://i61.tinypic.com/29zu16r.png[/IMG]

histones profiles average • 1.2k views
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5.8 years ago

You could use R, with colMeans()plot(), lines() and related functions. You'd add as many lines() calls as you need to show multiple aggregate profiles for various signals (example).

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5.8 years ago

See the deepTools suite, in particular the computeMatrix and profiler tools ( https://github.com/fidelram/deepTools/wiki/Visualizations ). Similar questions have appeared a few times on biostars.

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