I am doing variant calling for a sample using SAMtools, GATK, Platypus, Freebayes. I observed the allele frequency generated by different tools varies for the some of variants. The allele frequency has to be same , but why it is changing?
Question: Why the Allele frequency changed when using different variant calling tools?
4.3 years ago by
murali • 90
murali • 90 wrote:
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