Question: How to normalize RNAseq raw read counts with out control?
1
gravatar for ifudontmind_plzz
3.6 years ago by
Netherlands
ifudontmind_plzz110 wrote:

Hi,

I have few RNAseq data (raw read counts) from mouse  tumor samples. I dont have any controls or biological replicates. How can i normalize these type of data set?

 

 

 

 

 

rna-seq R • 1.3k views
ADD COMMENTlink written 3.6 years ago by ifudontmind_plzz110
1

You could median normalize every row across samples. That way you can still identify extreme changes.

ADD REPLYlink written 3.6 years ago by Matt Shirley8.9k
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