Entering edit mode
8.6 years ago
James Ashmore
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3.4k
I want to download a BED file of various genome annotations (introns, exons, 3' UTR, 5' UTR) for a given assembly. I can do this through the UCSC table browser following these instructions, however I'd like to do it programmatically. Currently I get these regions from the full refGene table using MySQL to download the table and a custom script to parse out the regions into BED format. Does UCSC already offer an established way to do this?