Question: Download genome annotations from UCSC's MySQL database
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James Ashmore • 3.1k wrote:
I want to download a BED file of various genome annotations (introns, exons, 3' UTR, 5' UTR) for a given assembly. I can do this through the UCSC table browser following these instructions, however I'd like to do it programmatically. Currently I get these regions from the full refGene table using MySQL to download the table and a custom script to parse out the regions into BED format. Does UCSC already offer an established way to do this?
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modified 5.5 years ago
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Pierre Lindenbaum ♦ 134k
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written
5.5 years ago by
James Ashmore • 3.1k