Question: Creating alternate Bed file by incorporating INDELs locations
4.7 years ago by
ersgupta • 0
ersgupta • 0 wrote:
I have a exome bed file (coordinates wrt to ref genome) and a bed file with coordinates of INDELs (incorporated in ref genome). Now I want to generate a modified exome bed file which can shift the coordinates wrt to INDEL event.
exome bed file: chr1 10 100 chr1 200 400 indels file: chr1 120 150 deletion output exome bed file: chr1 10 100 chr1 170 370
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