Question: Gene Regulatory Network (GRN) reconstruction and assessment tools
0
gravatar for Parisa
3.7 years ago by
Parisa0
United States
Parisa0 wrote:

Hi,

I am looking for tools and algorithms about GRN reconstruction as well as GRN assessment. Some examples are CellNet, ARACNE, TIGRESS, and so on. I wonder if anybody here has any suggestion.

Thank you in advance. 

ADD COMMENTlink modified 3.3 years ago by k.theofilatos10 • written 3.7 years ago by Parisa0

in genepattern (pathway analysis), there are ready toold that only need the input file and assessment part also is in downstream part.

i found NetBenchmark package also doing GRN inference and evaluation on more than 10 methods but i could not figure out that yet. but this package failed to evaluate the results.

ADD REPLYlink modified 3.3 years ago • written 3.6 years ago by F3.4k
1
gravatar for k.theofilatos
3.3 years ago by
k.theofilatos10 wrote:

You can construct co-expression networks from your gene expression experiments with several algorithms and methods with InSyBio BioNets (a demo is available herehttp://demo.insybio.com and you can request for a free one month access at info@insybio.com). For more details read the relevant white paper: http://insybio.com/pages/bionets 

ADD COMMENTlink written 3.3 years ago by k.theofilatos10
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