fastqToCA command in Celera Assembler
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5.5 years ago
dahliashvets ▴ 10

I am trying to create the .frg file in order to run the runCA command in the Celera Assembler. I am having no luck though. This is the command that I am trying to run:

~/Desktop/PACBIO_Research/wgs-8.3rc2/Darwin-amd64/bin/fastqToCA -libraryname TEST -reads shortFile.fastq > test.frg

And this is the error that I am getting:

dyld: Library not loaded: /opt/local/lib/libgcc/libgomp.1.dylib
  Referenced from: /Desktop/PACBIO_Research/wgs-8.3rc2/Darwin-amd64/bin/fastqToCA
  Reason: image not found
[1]    1207 trace trap   -libraryname TEST -reads shortFile.fastq > test.frg

I don't understand what the error means by "image not found". Adding the technology tag doesn't make a difference. Any help would be much appreciated! Thank you!

celera assembly pacbio de novo fastq fasqtoca • 1.9k views
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using mac  ? its a OS related error.

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Yes I am using a mac, I have gotten it to run on a mac at work but am trying to now run it at home on my laptop. Any ideas what the error could mean? Thanks!

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There is no single reason for this errors. Check some solutions from stackoverflow.

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