Question: Working with amplicon 16S Illumina and isolates strains
0
gravatar for l.cortes.tolalpa
4.2 years ago by
Netherlands
l.cortes.tolalpa0 wrote:

Hi all!

I have sequences, 16S amplicon Illumina, from environmental samples and also I have sequences, 16S rRNA gene, from isolated strains from the same samples. I want to look for the singles isolates 16S in the amplicon sequences and know how much they match. Could you recommend me a software or tool that I can do it? Thank you for your time! Best Larisa

 

 

 

 

 

blast rna-seq alignment • 1.3k views
ADD COMMENTlink modified 4.0 years ago by h.mon28k • written 4.2 years ago by l.cortes.tolalpa0
0
gravatar for h.mon
4.0 years ago by
h.mon28k
Brazil
h.mon28k wrote:

Look at VSEARCH, cd-hit or USEARCH.

ADD COMMENTlink written 4.0 years ago by h.mon28k
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