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Question: Working with amplicon 16S Illumina and isolates strains
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gravatar for l.cortes.tolalpa
5.0 years ago by
l.cortes.tolalpa • 0
Netherlands
l.cortes.tolalpa • 0 wrote:

Hi all!

I have sequences, 16S amplicon Illumina, from environmental samples and also I have sequences, 16S rRNA gene, from isolated strains from the same samples. I want to look for the singles isolates 16S in the amplicon sequences and know how much they match. Could you recommend me a software or tool that I can do it? Thank you for your time! Best Larisa

 

 

 

 

 
blast rna-seq alignment • 1.4k views
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modified 4.8 years ago by h.mon ♦ 31k • written 5.0 years ago by l.cortes.tolalpa • 0
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gravatar for h.mon
4.8 years ago by
h.mon ♦ 31k
Brazil
h.mon ♦ 31k wrote:

Look at VSEARCH, cd-hit or USEARCH.
ADD COMMENT • link written 4.8 years ago by h.mon ♦ 31k
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