Question: Working with amplicon 16S Illumina and isolates strains
gravatar for l.cortes.tolalpa
5.0 years ago by
l.cortes.tolalpa0 wrote:

Hi all!

I have sequences, 16S amplicon Illumina, from environmental samples and also I have sequences, 16S rRNA gene, from isolated strains from the same samples. I want to look for the singles isolates 16S in the amplicon sequences and know how much they match. Could you recommend me a software or tool that I can do it? Thank you for your time! Best Larisa






blast rna-seq alignment • 1.4k views
ADD COMMENTlink modified 4.8 years ago by h.mon31k • written 5.0 years ago by l.cortes.tolalpa0
gravatar for h.mon
4.8 years ago by
h.mon31k wrote:

Look at VSEARCH, cd-hit or USEARCH.

ADD COMMENTlink written 4.8 years ago by h.mon31k
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