Working with amplicon 16S Illumina and isolates strains
1
0
Entering edit mode
5.5 years ago

Hi all!

I have sequences, 16S amplicon Illumina, from environmental samples and also I have sequences, 16S rRNA gene, from isolated strains from the same samples. I want to look for the singles isolates 16S in the amplicon sequences and know how much they match. Could you recommend me a software or tool that I can do it? Thank you for your time! Best Larisa

 

 

 

 

 

RNA-Seq alignment blast • 1.5k views
ADD COMMENT
0
Entering edit mode
5.4 years ago
h.mon 32k

Look at VSEARCH, cd-hit or USEARCH.

ADD COMMENT

Login before adding your answer.

Traffic: 1696 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6