Entering edit mode
8.6 years ago
haoye.ecust
•
0
Hi guys,
I come across a issue in the VCF file generated from isaac SNV calling in illumina.
The GT contains "1" and "1/1". Do any one knows what's difference between them. Does "1" also means "homozygous"?
The GT = "1" are found in the chr 1, 2, besides chr x, y. (see the example below)
#CHROM POS ID REF ALT QUAL FILTER FORMAT Sample A01
chr1 930751 rs3128111 C G 153 PASS GT:GQ:GQX:DP:DPF:AD 0/1:186:153:66:1:43,23
chr1 930892 rs2799059 T C 87 PASS GT:GQ:GQX:DP:DPF:AD 1:84:84:29:1:0,29
chr1 930923 rs2710882 A G 541 PASS GT:GQ:GQX:DP:DPF:AD 1/1:123:123:42:4:0,42