I scanned Affymetrix Mouse Gene 1.0 ST microarray and chose the option "Human Gene 1.0 ST" by mistake. Now all the CEL files generated after scanning by AGCC are meant to be human CEL files, but they are mouse files. I tried to change the probe array type in AGCC (there is a standart function), something happened, but the CEL files remained the same and are read as Human CEL files by genotyping console.
I thought it might be possible to regenerate CEL files from the DAT files (as they are raw images they should be correct anyway) but I couldn't find how to do it via AGCC or any other software. I would greatly appreciate if anyone could help me to solve this problem.