I'm using SPIA to analyse a list of deferentially methylated genes. Does anyone know how I can update the KEGG pathways as I currently only have 137 and from what I can tell there are around 299. I know that KEGG now charges for FTP but is there an alternative free update. I think SPIA is capable of downloading individual pathways but this would be a pretty big job to do manually. I've found these posts but can''t seem to get it to work.
So basically, can I update KEGG pathways and how do I integrate this into SPIA.