Question: minia kmer limit
0
2
edrezen • 720 wrote:
Hello,
By default, this version 2.0.3 of minia supports kmer sizes up to 127.
If you want to use greater kmer size, you need to compile it with a maximum value of your choice; you can do the following (the k4 value should be a multiple of 32)
wget "http://gatb-tools.gforge.inria.fr/versions/src/minia-2.0.3-Source.tar.gz"
tar xvf minia-2.0.3-Source.tar.gz
cd minia-2.0.3-Source
mkdir build
cd build
cmake -DSKIP_DOC=1 -Dk4=160 ..
make
Then you should have a minia command that will support kmer sizes up to 159.
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