Question: minia kmer limit
0
2
edrezen • 720 wrote:
Hello,
By default, this version 2.0.3 of minia supports kmer sizes up to 127.
If you want to use greater kmer size, you need to compile it with a maximum value of your choice; you can do the following (the k4 value should be a multiple of 32)
wget "http://gatb-tools.gforge.inria.fr/versions/src/minia-2.0.3-Source.tar.gz"
tar xvf minia-2.0.3-Source.tar.gz
cd minia-2.0.3-Source
mkdir build
cd build
cmake -DSKIP_DOC=1 -Dk4=160 ..
make
Then you should have a minia command that will support kmer sizes up to 159.
Please log in to add an answer.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1373 users visited in the last hour