Hi all,
I have DNA sequencing data where human tumors have mouse reads as per the experiment protocol(similar to PDX).
I have calculated the read counts of these mouse genes. using HTSEQ-count,after this I want to select only those mouse genes which have no homology to the human genome and only mouse specific.
Is there any tool to do this besides BLAST?Let me know.
Thanks,
Ron
How many genes are unique to mouse and not found in humans? I don't imagine that number is high.
I think it would be easier to create a database of mouse-specific genes first and then use that to extract the sequences you're interested in.